If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ), 'gf_id' => 'HOM05D000937', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000937' ), 'data_identifier' => 'HOM05D000937', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000937', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '644', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16010' => 'bna', 'A02p16640' => 'bna', 'A07p36990' => 'bna', 'A08p08380' => 'bna', 'A09p32430' => 'bna', 'A09p41350' => 'bna', 'A09p41430' => 'bna', 'Aa31LG4G10390' => 'aar', 'Aa31LG6G8250' => 'aar', 'Aa31LG7G7340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4086' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5214' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2877' => 'aag', 'Actinidia02663' => 'ach', 'Actinidia04746' => 'ach', 'Actinidia15080' => 'ach', 'Actinidia19348' => 'ach', 'Actinidia29551' => 'ach', 'Actinidia29552' => 'ach', 'Actinidia29553' => 'ach', 'Actinidia29554' => 'ach', 'Actinidia33093' => 'ach', 'Actinidia37415' => 'ach', 'Ah.03g133180' => 'amhyb', 'Ah.11g051370' => 'amhyb', 'AL1G37110' => 'aly', 'AL1G48480' => 'aly', 'AL1G48560' => 'aly', 'AL2G29950' => 'aly', 'AL7G28530' => 'aly', 'Aqoxy1G03744' => 'aox', 'Aqoxy1G03754' => 'aox', 'Aqoxy218s003' => 'aox', 'Aqoxy3G02806' => 'aox', 'Aqoxy3G02820' => 'aox', 'Aqoxy3G02822' => 'aox', 'Aqoxy3G02828' => 'aox', 'Aqoxy5G02164' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L7ZD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2HY2G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2IUT9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35K0FL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6N19J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF44XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXXJ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8IU2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS4878' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWG05K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4LK2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4S157' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QG555S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U4WGIZ' => 'arhy', 'AT1G23320' => 'ath', 'AT1G34040' => 'ath', 'AT1G34060' => 'ath', 'AT1G70560' => 'ath', 'AT4G24670' => 'ath', 'ATR0568G221' => 'atr', 'Atru.chr11.2095' => 'acertr', 'Atru.chr13.2000' => 'acertr', 'Atru.chr9.2545' => 'acertr', 'Atru.chr9.2546' => 'acertr', 'AUR62003520' => 'cqu', 'AUR62005440' => 'cqu', 'AUR62005442' => 'cqu', 'AUR62008169' => 'cqu', 'AUR62017494' => 'cqu', 'AUR62017495' => 'cqu', 'AUR62017832' => 'cqu', 'AUR62024299' => 'cqu', 'AUR62026633' => 'cqu', 'AUR62026634' => 'cqu', 'AUR62028746' => 'cqu', 'AUR62034890' => 'cqu', 'BcaB03g14822' => 'bca', 'BcaB04g17905' => 'bca', 'BcaB05g24589' => 'bca', 'BcaB07g32319' => 'bca', 'BcaB07g33026' => 'bca', 'BcaB07g33027' => 'bca', 'BcaC03g15206' => 'bca', 'BcaC05g26241' => 'bca', 'BcaC05g26242' => 'bca', 'BcaC08g43818' => 'bca', 'BcaC08g46506' => 'bca', 'BcaC09g50843' => 'bca', 'BcaNung04955' => 'bca', 'BolC1t01927H' => 'bol', 'BolC2t08836H' => 'bol', 'BolC5t30951H' => 'bol', 'BolC5t30952H' => 'bol', 'BolC6t36337H' => 'bol', 'BolC6t39519H' => 'bol', 'BolC8t47877H' => 'bol', 'BraA01t01535Z' => 'bra', 'BraA02t06720Z' => 'bra', 'BraA07t31262Z' => 'bra', 'BraA08t32854Z' => 'bra', 'BraA09t38784Z' => 'bra', 'BraA09t39628Z' => 'bra', 'C01p20000' => 'bna', 'C02p27910' => 'bna', 'C05p22530' => 'bna', 'C06p12030' => 'bna', 'C06p44560' => 'bna', 'CAN.G1414.3' => 'can', 'CAN.G338.12' => 'can', 'CAN.G447.5' => 'can', 'CAN.G673.22' => 'can', 'CAN.G810.3' => 'can', 'CAN.G810.4' => 'can', 'CAN.G993.30' => 'can', 'CANSAT01G0588' => 'cansat', 'CANSAT25G3443' => 'cansat', 'CANSAT25G3691' => 'cansat', 'CANSAT25G3785' => 'cansat', 'CANSAT80G0880' => 'cansat', 'CARHR023770' => 'chi', 'CARHR033440' => 'chi', 'CARHR033450' => 'chi', 'CARHR033490' => 'chi', 'CARHR033500' => 'chi', 'CARHR033510' => 'chi', 'CARHR033530' => 'chi', 'CARHR063770' => 'chi', 'CARHR232050' => 'chi', 'Carub.0001s2291' => 'cru', 'Carub.0001s3212' => 'cru', 'Carub.0001s3215' => 'cru', 'Carub.0002s1728' => 'cru', 'Carub.0007s1639' => 'cru', 'Ca_04587_v3' => 'car', 'Ca_16149_v3' => 'car', 'Ca_21951_v3' => 'car', 'Cc04_g11870' => 'ccan', 'Cc10_g15290' => 'ccan', 'Cc10_g15300' => 'ccan', 'Cc10_g15310' => 'ccan', 'Cc10_g15320' => 'ccan', 'Cc10_g15330' => 'ccan', 'Cc10_g15340' => 'ccan', 'Cc11_g15530' => 'ccan', 'CDE07G0197' => 'cde', 'CDE11G1174' => 'cde', 'Cfa009195' => 'cfa', 'Cfa012975' => 'cfa', 'Cfa019180' => 'cfa', 'Cfa020951' => 'cfa', 'Ciclev10003681m.g' => 'ccl', 'Ciclev10020085m.g' => 'ccl', 'Ciclev10033774m.g' => 'ccl', 'CiPaw.05G184300' => 'cil', 'CiPaw.07G235100' => 'cil', 'CiPaw.07G235200' => 'cil', 'CiPaw.11G022200' => 'cil', 'CiPaw.12G029300' => 'cil', 'ClCG01G013380' => 'cla', 'ClCG06G017250' => 'cla', 'ClCG08G017760' => 'cla', 'COL.COLO4_00137' => 'col', 'COL.COLO4_13745' => 'col', 'COL.COLO4_13746' => 'col', 'COL.COLO4_13751' => 'col', 'COL.COLO4_13752' => 'col', 'COL.COLO4_13762' => 'col', 'COL.COLO4_13770' => 'col', 'COL.COLO4_13774' => 'col', 'COL.COLO4_13777' => 'col', 'COL.COLO4_24242' => 'col', 'COL.COLO4_30133' => 'col', 'Cpa.g.sc26.79' => 'cpa', 'Cpa.g.sc26.99' => 'cpa', 'Cpa.g.sc35.70' => 'cpa', 'Cpa.g.sc69.95' => 'cpa', 'CsaV3_1G001250' => 'csa', 'CsaV3_1G008730' => 'csa', 'CSS0000666' => 'camsi', 'CSS0022132' => 'camsi', 'CSS0026273' => 'camsi', 'CSS0027154' => 'camsi', 'CSS0032155' => 'camsi', 'CSS0036646' => 'camsi', 'CSS0042288' => 'camsi', 'CSS0044894' => 'camsi', 'CSS0046229' => 'camsi', 'DCAR_007465' => 'dca', 'DCAR_011669' => 'dca', 'DCAR_024445' => 'dca', 'DCAR_026162' => 'dca', 'Dinv02462' => 'din', 'Dinv20615' => 'din', 'Dinv20616' => 'din', 'Dinv24808' => 'din', 'Dinv25901' => 'din', 'Dinv38552' => 'din', 'Duzib093G1479' => 'dzi', 'Duzib116G0094' => 'dzi', 'Duzib205G0519' => 'dzi', 'Duzib248G0973' => 'dzi', 'Duzib268G0511' => 'dzi', 'Duzib268G0975' => 'dzi', 'ECA232G2611' => 'eca', 'ECA233G2760' => 'eca', 'ECA234G3807' => 'eca', 'EL10Ac4g08247' => 'bvu', 'EL10Ac4g08248' => 'bvu', 'EL10Ac5g10687' => 'bvu', 'EL10Ac6g13776' => 'bvu', 'EL10Ac6g13777' => 'bvu', 'EL10Ac6g13778' => 'bvu', 'Eucgr.B00238' => 'egr', 'Eucgr.F04184' => 'egr', 'Eucgr.F04186' => 'egr', 'Eucgr.F04187' => 'egr', 'Eucgr.H02519' => 'egr', 'Eucgr.L02339' => 'egr', 'Eucgr.L02340' => 'egr', 'Eucgr.L02799' => 'egr', 'FAN01G2062' => 'fan', 'FAN01G2206' => 'fan', 'FAN01G2605' => 'fan', 'FAN03G1211' => 'fan', 'FAN04G0981' => 'fan', 'FAN06G4535' => 'fan', 'FAN06G4875' => 'fan', 'FAN07G0869' => 'fan', 'FAN07G1297' => 'fan', 'FAN08G0908' => 'fan', 'FAN08G2809' => 'fan', 'FAN10G2789' => 'fan', 'FAN12G1429' => 'fan', 'FAN12G1475' => 'fan', 'FAN13G0621' => 'fan', 'FAN13G2160' => 'fan', 'FAN13G2670' => 'fan', 'FAN15G1227' => 'fan', 'FAN15G3674' => 'fan', 'FAN17G1288' => 'fan', 'FAN18G3082' => 'fan', 'FAN18G4552' => 'fan', 'FAN20G0403' => 'fan', 'FAN20G2782' => 'fan', 'FAN22G2169' => 'fan', 'FAN24G1034' => 'fan', 'FAN25G2754' => 'fan', 'FAN26G0064' => 'fan', 'FAN26G0387' => 'fan', 'FAN26G3306' => 'fan', 'FAN27G0033' => 'fan', 'FAN27G1587' => 'fan', 'FvH4_2g13010' => 'fve', 'FvH4_4g25850' => 'fve', 'FvH4_5g05880' => 'fve', 'FvH4_5g05900' => 'fve', 'FvH4_7g02760' => 'fve', 'FvH4_7g02842' => 'fve', 'Glyma.01G027400' => 'gma', 'Glyma.02G037600' => 'gma', 'Glyma.02G077600' => 'gma', 'Glyma.02G082700' => 'gma', 'Glyma.04G186700' => 'gma', 'Glyma.05G040400' => 'gma', 'Glyma.06G179000' => 'gma', 'Glyma.16G139901' => 'gma', 'Glyma.16G160600' => 'gma', 'Glyma.16G162300' => 'gma', 'Glyma.16G162400' => 'gma', 'Glyma.16G162500' => 'gma', 'Glyma.16G165300' => 'gma', 'Glyma.17G086500' => 'gma', 'Gohir.A01G122800' => 'ghi', 'Gohir.A03G136800' => 'ghi', 'Gohir.A04G136300' => 'ghi', 'Gohir.A04G136350' => 'ghi', 'Gohir.A07G034700' => 'ghi', 'Gohir.A07G154100' => 'ghi', 'Gohir.A09G172100' => 'ghi', 'Gohir.D01G110600' => 'ghi', 'Gohir.D02G160000' => 'ghi', 'Gohir.D04G179300' => 'ghi', 'Gohir.D04G179400' => 'ghi', 'Gohir.D07G038133' => 'ghi', 'Gohir.D07G160500' => 'ghi', 'Gohir.D09G167800' => 'ghi', 'Gorai.001G040000' => 'gra', 'Gorai.001G183500' => 'gra', 'Gorai.002G135400' => 'gra', 'Gorai.005G180100' => 'gra', 'Gorai.006G189500' => 'gra', 'Gorai.012G172400' => 'gra', 'GSVIVG01001410001' => 'vvi', 'GSVIVG01001412001' => 'vvi', 'GSVIVG01001413001' => 'vvi', 'GSVIVG01001414001' => 'vvi', 'GSVIVG01001418001' => 'vvi', 'GSVIVG01001419001' => 'vvi', 'GSVIVG01001422001' => 'vvi', 'GSVIVG01004095001' => 'vvi', 'GSVIVG01006656001' => 'vvi', 'GSVIVG01007679001' => 'vvi', 'HanXRQChr07g0197631' => 'han', 'HanXRQChr08g0227991' => 'han', 'HanXRQChr11g0328761' => 'han', 'HanXRQChr11g0328811' => 'han', 'HanXRQChr11g0328821' => 'han', 'HanXRQChr11g0328831' => 'han', 'HanXRQChr11g0328851' => 'han', 'HanXRQChr11g0328861' => 'han', 'HanXRQChr11g0328871' => 'han', 'HanXRQChr11g0328891' => 'han', 'HanXRQChr11g0328901' => 'han', 'HanXRQChr11g0328921' => 'han', 'HanXRQChr11g0328931' => 'han', 'HanXRQChr11g0338591' => 'han', 'HanXRQChr11g0338611' => 'han', 'HanXRQChr11g0342921' => 'han', 'HanXRQChr11g0342951' => 'han', 'HanXRQChr11g0348361' => 'han', 'HanXRQChr12g0383321' => 'han', 'HanXRQChr13g0391681' => 'han', 'HanXRQChr13g0391691' => 'han', 'HanXRQChr13g0391711' => 'han', 'HanXRQChr13g0391741' => 'han', 'HanXRQChr16g0504651' => 'han', 'HanXRQChr17g0569941' => 'han', 'Haze_07558' => 'cav', 'Haze_12232' => 'cav', 'Haze_18640' => 'cav', 'Haze_21327' => 'cav', 'Haze_21330' => 'cav', 'Haze_21332' => 'cav', 'Hma1.2p1_0046F.1_g026910' => 'hma', 'Hma1.2p1_0678F.1_g202030' => 'hma', 'HPP92_000307' => 'vpl', 'HPP92_000308' => 'vpl', 'HPP92_004914' => 'vpl', 'HPP92_004915' => 'vpl', 'HPP92_008335' => 'vpl', 'HPP92_011479' => 'vpl', 'Hund02772' => 'sun', 'Hund09458' => 'sun', 'Lalb_Chr03g0035501' => 'lal', 'Lalb_Chr07g0182871' => 'lal', 'Lalb_Chr09g0326201' => 'lal', 'Lalb_Chr12g0201791' => 'lal', 'Lalb_Chr16g0382041' => 'lal', 'Lalb_Chr16g0382051' => 'lal', 'Lj1g0026298' => 'lja', 'Lj2g0010488' => 'lja', 'Lj2g0015590' => 'lja', 'Lj2g0017421' => 'lja', 'Lj4A634G14' => 'lonja', 'Lj4g0027325' => 'lja', 'Lj6A810T64' => 'lonja', 'Lj7A163G46' => 'lonja', 'Lj9C444T23' => 'lonja', 'Lj9C444T24' => 'lonja', 'Lsat_1_v5_gn_4_4581' => 'lsa', 'Lsat_1_v5_gn_4_75461' => 'lsa', 'Lsat_1_v5_gn_9_42201' => 'lsa', 'Lsat_1_v5_gn_9_42261' => 'lsa', 'Manes.02G183501' => 'mes', 'Manes.12G024800' => 'mes', 'Manes.14G062400' => 'mes', 'Manes.18G095100' => 'mes', 'Manes.18G095250' => 'mes', 'Manes.18G102100' => 'mes', 'Mapoly0023s0144' => 'mpo', 'Mapoly0032s0124' => 'mpo', 'MBI01_g34169_MAGBIO' => 'mbi', 'MBI16_g23853_MAGBIO' => 'mbi', 'MBI16_g23854_MAGBIO' => 'mbi', 'MBI16_g23855_MAGBIO' => 'mbi', 'MBI16_g23856_MAGBIO' => 'mbi', 'MD05G1033800' => 'mdo', 'MD06G1169600' => 'mdo', 'MD10G1035100' => 'mdo', 'MD10G1035600' => 'mdo', 'MD10G1035700' => 'mdo', 'MD10G1035800' => 'mdo', 'MD13G1097300' => 'mdo', 'MD14G1175000' => 'mdo', 'MD16G1098400' => 'mdo', 'Medtr3g077250' => 'mtr', 'Medtr4g105220' => 'mtr', 'Medtr5g033510' => 'mtr', 'Medtr5g033520' => 'mtr', 'MELO3C002288.2' => 'cme', 'MELO3C026271.2' => 'cme', 'MELO3C026272.2' => 'cme', 'Migut.C00136' => 'egut', 'Migut.C00139' => 'egut', 'Migut.C00378' => 'egut', 'Migut.D01989' => 'egut', 'Migut.L01478' => 'egut', 'Migut.O00136' => 'egut', 'MSTRG.11483' => 'ama', 'MSTRG.12856' => 'ama', 'MSTRG.24932' => 'ama', 'MSTRG.24933' => 'ama', 'MSTRG.975' => 'ama', 'Nitab4.5_0000003g0790' => 'nta', 'Nitab4.5_0000031g0380' => 'nta', 'Nitab4.5_0000188g0060' => 'nta', 'Nitab4.5_0000188g0070' => 'nta', 'Nitab4.5_0000413g0200' => 'nta', 'Nitab4.5_0000677g0170' => 'nta', 'Nitab4.5_0000677g0180' => 'nta', 'Nitab4.5_0000872g0050' => 'nta', 'Nitab4.5_0000872g0060' => 'nta', 'Nitab4.5_0000872g0070' => 'nta', 'Nitab4.5_0000872g0100' => 'nta', 'Nitab4.5_0001284g0120' => 'nta', 'Nitab4.5_0001319g0010' => 'nta', 'Nitab4.5_0002255g0070' => 'nta', 'Nitab4.5_0002552g0020' => 'nta', 'Nitab4.5_0006843g0010' => 'nta', 'Nitab4.5_0006843g0020' => 'nta', 'Nitab4.5_0006843g0040' => 'nta', 'Nitab4.5_0006843g0050' => 'nta', 'Nitab4.5_0007239g0020' => 'nta', 'Nn1g00206' => 'nnu', 'Nn1g05944' => 'nnu', 'Nn2g12234' => 'nnu', 'Nn2g14792' => 'nnu', 'Nn3g16757' => 'nnu', 'Nn3g17041' => 'nnu', 'Nn4g22105' => 'nnu', 'Nn4g22658' => 'nnu', 'Nn4g22659' => 'nnu', 'Nn4g26448' => 'nnu', 'Nn4g26449' => 'nnu', 'Nn5g28836' => 'nnu', 'Oeu002072.1' => 'oeu', 'Oeu013169.1' => 'oeu', 'Oeu036525.1' => 'oeu', 'Oeu049181.1' => 'oeu', 'Oeu051285.2' => 'oeu', 'Oeu056720.1' => 'oeu', 'Oeu056721.1' => 'oeu', 'Os01g0169800' => 'osa', 'Os01g0717400' => 'osa', 'Os01g0717700' => 'osa', 'Os05g0169300' => 'osa', 'Peaxi162Scf00089g01520' => 'pax', 'Peaxi162Scf00128g00028' => 'pax', 'Peaxi162Scf00160g01767' => 'pax', 'Peaxi162Scf00297g01122' => 'pax', 'Peaxi162Scf00297g01123' => 'pax', 'Peaxi162Scf00689g00027' => 'pax', 'Peaxi162Scf01184g00017' => 'pax', 'PGR044G0667' => 'pgr', 'PGR083G0188' => 'pgr', 'PGR102G1225' => 'pgr', 'PGR119G1132' => 'pgr', 'PGR119G1874' => 'pgr', 'PGR119G2092' => 'pgr', 'PGSC0003DMG400007680' => 'stu', 'PGSC0003DMG400007681' => 'stu', 'PGSC0003DMG400018110' => 'stu', 'PGSC0003DMG400018931' => 'stu', 'PGSC0003DMG400023890' => 'stu', 'PGSC0003DMG400025405' => 'stu', 'PGSC0003DMG400027079' => 'stu', 'PGSC0003DMG400029097' => 'stu', 'PGSC0003DMG400029098' => 'stu', 'PGSC0003DMG400029970' => 'stu', 'PGSC0003DMG400029972' => 'stu', 'PGSC0003DMG400039304' => 'stu', 'PGSC0003DMG400040623' => 'stu', 'PGSC0003DMG400045243' => 'stu', 'PGSC0003DMG400046885' => 'stu', 'PGSC0003DMG401018799' => 'stu', 'PGSC0003DMG402018799' => 'stu', 'Phvul.002G059200' => 'pvu', 'Phvul.003G098600' => 'pvu', 'Phvul.003G203500' => 'pvu', 'Phvul.004G088400' => 'pvu', 'Phvul.009G175300' => 'pvu', 'Potri.002G063800' => 'ptr', 'Potri.002G064000' => 'ptr', 'Potri.008G187800' => 'ptr', 'Potri.010G044500' => 'ptr', 'Potri.012G083300' => 'ptr', 'Potri.T125108' => 'ptr', 'Pp3c17_6500' => 'ppa', 'Pp3c18_15140' => 'ppa', 'Pp3c21_15370' => 'ppa', 'Pp3c25_6670' => 'ppa', 'Pp3c26_12520' => 'ppa', 'Pp3c3_4230' => 'ppa', 'Pp3c5_24670' => 'ppa', 'PRCOL_00004458' => 'pco', 'Prupe.1G248200' => 'ppe', 'Prupe.1G248300' => 'ppe', 'Prupe.5G168300' => 'ppe', 'Prupe.8G041100' => 'ppe', 'Prupe.8G041200' => 'ppe', 'Prupe.8G041300' => 'ppe', 'Prupe.8G041400' => 'ppe', 'Prupe.8G041500' => 'ppe', 'Prupe.8G041600' => 'ppe', 'Psat0s2597g0240' => 'psa', 'Psat2g093920' => 'psa', 'Psat2g102880' => 'psa', 'Psat4g059800' => 'psa', 'PSO063G1118' => 'pso', 'PSO170G5677' => 'pso', 'PSO210G0618' => 'pso', 'PSO210G1394' => 'pso', 'PSO210G6359' => 'pso', 'PSO242G0008' => 'pso', 'PSO386G0044' => 'pso', 'PSO832G3834' => 'pso', 'QL02p037418' => 'qlo', 'QL02p037904' => 'qlo', 'QL03p058594' => 'qlo', 'QL04p095910' => 'qlo', 'QL04p095934' => 'qlo', 'QL10p008391' => 'qlo', 'RcHm_v2.0_Chr4g0433291' => 'rch', 'RcHm_v2.0_Chr6g0274171' => 'rch', 'RcHm_v2.0_Chr6g0274191' => 'rch', 'RcHm_v2.0_Chr7g0192931' => 'rch', 'RcHm_v2.0_Chr7g0192941' => 'rch', 'Rhsim08G0175700' => 'rsi', 'Rhsim11G0087900' => 'rsi', 'Rhsim11G0088000' => 'rsi', 'Rhsim12G0041500' => 'rsi', 'Rhsim12G0041600' => 'rsi', 'Sabra02G0051200' => 'sbr', 'Sabra05G0150100' => 'sbr', 'Sabra08G0142200' => 'sbr', 'Sabra10G0023400' => 'sbr', 'Sabra12G0060000' => 'sbr', 'Sabra15G0105400' => 'sbr', 'SalBow2G1055' => 'sbo', 'SalBow5G1998' => 'sbo', 'SalBow5G4054' => 'sbo', 'SalBow7G3761' => 'sbo', 'SalBow7G4406' => 'sbo', 'SalBow8G2194' => 'sbo', 'Sc02g0004950' => 'sci', 'Sc02g0004960' => 'sci', 'Sc12g0005100' => 'sci', 'Sc14g0008690' => 'sci', 'Sc15g0003850' => 'sci', 'Sed0002872' => 'sed', 'Sed0017716' => 'sed', 'Sed0023019' => 'sed', 'SEGI_07956' => 'sgi', 'SEGI_10324' => 'sgi', 'SEGI_10900' => 'sgi', 'SEGI_17239' => 'sgi', 'SEGI_17705' => 'sgi', 'SEGI_23449' => 'sgi', 'SEGI_35271' => 'sgi', 'SEGI_41148' => 'sgi', 'SGA_v2.0_scaffold228G43266' => 'sas', 'SGA_v2.0_scaffold25G10810' => 'sas', 'SGA_v2.0_scaffold7G04153' => 'sas', 'SGA_v2.0_scaffold82G26146' => 'sas', 'SGA_v2.0_scaffold82G26148' => 'sas', 'SGA_v2.0_scaffold90G27862' => 'sas', 'SHI17172' => 'shi', 'SMO115G0195' => 'smo', 'SMO166G0027' => 'smo', 'SMO275G0016' => 'smo', 'SMO351G0168' => 'smo', 'SMO367G0673' => 'smo', 'Solyc01g017610.1' => 'sly', 'Solyc01g017620.1' => 'sly', 'Solyc02g062190.2' => 'sly', 'Solyc03g112460.3' => 'sly', 'Solyc05g031600.3' => 'sly', 'Solyc06g071640.3' => 'sly', 'Sopen01g013450' => 'spe', 'Sopen03g031540' => 'spe', 'Sopen05g024410' => 'spe', 'Sopen06g027950' => 'spe', 'Sp1g20760' => 'spa', 'Sp1g29310' => 'spa', 'Sp1g29330' => 'spa', 'Sp5g25710' => 'spa', 'Sp7g22660' => 'spa', 'TAR371G1115' => 'tar', 'TAR374G0552' => 'tar', 'TAR622G0555' => 'tar', 'TAR622G0826' => 'tar', 'TAR628G1643' => 'tar', 'TAR629G0243' => 'tar', 'THA.LOC104809038' => 'tha', 'THA.LOC104809260' => 'tha', 'THA.LOC104822161' => 'tha', 'THA.LOC104822981' => 'tha', 'Thecc.02G256900' => 'tca', 'Thecc.03G023300' => 'tca', 'Thecc.08G159900' => 'tca', 'Thecc.08G160000' => 'tca', 'Thecc.08G160100' => 'tca', 'Thhalv10007588m.g' => 'esa', 'Thhalv10009629m.g' => 'esa', 'Thhalv10009685m.g' => 'esa', 'Thhalv10010020m.g' => 'esa', 'Thhalv10018719m.g' => 'esa', 'Thhalv10025236m.g' => 'esa', 'TPR.G17780' => 'tpr', 'TPR.G24669' => 'tpr', 'TPR.G24672' => 'tpr', 'TPR.G27160' => 'tpr', 'TPR.G36661' => 'tpr', 'TPR.G37452' => 'tpr', 'TPR.G38787' => 'tpr', 'TWI32G0355' => 'twi', 'TWI34G0798' => 'twi', 'TWI36G0415' => 'twi', 'TWI39G0087' => 'twi', 'TWI60G0111' => 'twi', 'TWI75G1591' => 'twi', 'unitig_0.g1428' => 'ugi', 'unitig_0.g1429' => 'ugi', 'unitig_26.g10357' => 'ugi', 'unitig_61.g26474' => 'ugi', 'vmacro01132' => 'vma', 'vmacro01133' => 'vma', 'vmacro01136' => 'vma', 'vmacro01137' => 'vma', 'vmacro01495' => 'vma', 'vmacro01496' => 'vma', 'vmacro16209' => 'vma', 'vmacro17789' => 'vma', 'vmacro19320' => 'vma', 'VMungo0464G0460' => 'vmu', 'VMungo1215G0324' => 'vmu', 'VMungo1215G1914' => 'vmu', 'VMungo1309G2643' => 'vmu', 'VMungo1383G1267' => 'vmu', 'Zm00001eb123040' => 'zma', 'Zm00001eb137310' => 'zma', 'Zm00001eb154790' => 'zma', 'Zm00001eb154800' => 'zma', 'Zm00001eb281900' => 'zma', 'Zm00001eb283420' => 'zma', 'Zm00001eb336530' => 'zma' ) $gf_id = 'HOM05D000937' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000937' ) $data_identifier = 'HOM05D000937' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 6, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 5, 'car' => (int) 3, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 11, 'cpa' => (int) 4, 'csa' => (int) 2, 'camsi' => (int) 9, 'dca' => (int) 4, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 10, 'han' => (int) 25, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 6, 'lja' => (int) 5, 'lonja' => (int) 5, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 20, 'nnu' => (int) 12, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 17, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb336530' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1